Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 UBALD1-205ENST00000590891 2641 ntBASIC16.36■□□□□ 0.21
VPS35Q96QK1 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 SPCS2P4-201ENST00000436160 681 ntBASIC16.36■□□□□ 0.21
VPS35Q96QK1 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 AL691403.2-201ENST00000618460 490 ntBASIC16.36■□□□□ 0.21
VPS35Q96QK1 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS35Q96QK1 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS35Q96QK1 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 AC004461.1-201ENST00000412461 403 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 DNAJB3-202ENST00000449667 1266 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 LINC01225-203ENST00000563550 1244 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 AC004835.2-201ENST00000603762 682 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 GPALPP1-207ENST00000611650 899 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 AC084121.4-201ENST00000641598 221 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 AF228730.8-201ENST00000642140 221 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 AC073439.1-201ENST00000624121 1774 ntBASIC16.35■□□□□ 0.21
VPS35Q96QK1 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS35Q96QK1 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS35Q96QK1 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VPS35Q96QK1 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.34■□□□□ 0.21
VPS35Q96QK1 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms