Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PPP4R4Q6NUP7 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.86■□□□□ 0.13
PPP4R4Q6NUP7 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AC010491.1-201ENST00000563101 2797 ntBASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 SAPCD2P3-201ENST00000455031 850 ntBASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AC109462.3-201ENST00000573934 613 ntBASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AC011467.2-201ENST00000598425 242 ntBASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AC008608.2-201ENST00000606089 416 ntBASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.85■□□□□ 0.13
PPP4R4Q6NUP7 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 INTS4P1-201ENST00000438455 1935 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms