Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
IRX4P78413 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
IRX4P78413 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.21■□□□□ 0.35
IRX4P78413 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
IRX4P78413 AC025678.2-201ENST00000562061 970 ntBASIC17.21■□□□□ 0.35
IRX4P78413 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.21■□□□□ 0.35
IRX4P78413 AC023141.13-201ENST00000604991 943 ntBASIC17.21■□□□□ 0.35
IRX4P78413 GGTLC5P-201ENST00000617623 998 ntBASIC17.21■□□□□ 0.35
IRX4P78413 AC105339.1-204ENST00000636249 355 ntBASIC17.21■□□□□ 0.35
IRX4P78413 AC092902.6-201ENST00000641783 218 ntBASIC17.21■□□□□ 0.35
IRX4P78413 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
IRX4P78413 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
IRX4P78413 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.21■□□□□ 0.35
IRX4P78413 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
IRX4P78413 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
IRX4P78413 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
IRX4P78413 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
IRX4P78413 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
IRX4P78413 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
IRX4P78413 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
IRX4P78413 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.21■□□□□ 0.34
IRX4P78413 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
IRX4P78413 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.21■□□□□ 0.34
IRX4P78413 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
IRX4P78413 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
IRX4P78413 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.2■□□□□ 0.34
IRX4P78413 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
IRX4P78413 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
IRX4P78413 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
IRX4P78413 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.2■□□□□ 0.34
IRX4P78413 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.2■□□□□ 0.34
IRX4P78413 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.2■□□□□ 0.34
IRX4P78413 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.2■□□□□ 0.34
IRX4P78413 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.2■□□□□ 0.34
IRX4P78413 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.2■□□□□ 0.34
IRX4P78413 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.2■□□□□ 0.34
IRX4P78413 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.2■□□□□ 0.34
IRX4P78413 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.2■□□□□ 0.34
IRX4P78413 AC005498.2-205ENST00000593218 784 ntBASIC17.2■□□□□ 0.34
IRX4P78413 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.2■□□□□ 0.34
IRX4P78413 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
IRX4P78413 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
IRX4P78413 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.2■□□□□ 0.34
IRX4P78413 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.2■□□□□ 0.34
IRX4P78413 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
IRX4P78413 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.2■□□□□ 0.34
IRX4P78413 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
IRX4P78413 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.2■□□□□ 0.34
IRX4P78413 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
IRX4P78413 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.19■□□□□ 0.34
IRX4P78413 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.19■□□□□ 0.34
IRX4P78413 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.19■□□□□ 0.34
IRX4P78413 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
IRX4P78413 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.19■□□□□ 0.34
IRX4P78413 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.19■□□□□ 0.34
IRX4P78413 AP002414.1-201ENST00000391405 1147 ntBASIC17.19■□□□□ 0.34
IRX4P78413 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.19■□□□□ 0.34
IRX4P78413 IGHV3-52-201ENST00000519770 353 ntBASIC17.19■□□□□ 0.34
IRX4P78413 AC109322.1-201ENST00000524499 1264 ntBASIC17.19■□□□□ 0.34
IRX4P78413 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.19■□□□□ 0.34
IRX4P78413 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.19■□□□□ 0.34
IRX4P78413 AC019129.2-201ENST00000609837 1235 ntBASIC17.19■□□□□ 0.34
IRX4P78413 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
IRX4P78413 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
IRX4P78413 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.19■□□□□ 0.34
IRX4P78413 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms