Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.21■□□□□ 0.19
PKNOX1P55347 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PKNOX1P55347 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.21■□□□□ 0.19
PKNOX1P55347 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 AKR1C7P-201ENST00000305623 895 ntBASIC16.21■□□□□ 0.19
PKNOX1P55347 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.21■□□□□ 0.19
PKNOX1P55347 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.21■□□□□ 0.19
PKNOX1P55347 PMS2P1-201ENST00000431037 1228 ntBASIC16.21■□□□□ 0.19
PKNOX1P55347 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PKNOX1P55347 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.21■□□□□ 0.19
PKNOX1P55347 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.21■□□□□ 0.19
PKNOX1P55347 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PKNOX1P55347 AP001350.2-201ENST00000625104 1094 ntBASIC16.21■□□□□ 0.19
PKNOX1P55347 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.21■□□□□ 0.19
PKNOX1P55347 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.21■□□□□ 0.19
PKNOX1P55347 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PKNOX1P55347 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
PKNOX1P55347 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PKNOX1P55347 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.21■□□□□ 0.18
PKNOX1P55347 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PKNOX1P55347 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PKNOX1P55347 SLC22A20-204ENST00000530038 1673 ntBASIC16.21■□□□□ 0.18
PKNOX1P55347 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PKNOX1P55347 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PKNOX1P55347 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PKNOX1P55347 AC126177.1-201ENST00000547829 2218 ntBASIC16.21■□□□□ 0.18
PKNOX1P55347 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
PKNOX1P55347 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
PKNOX1P55347 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PKNOX1P55347 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 AC129492.6-201ENST00000611383 1305 ntBASIC16.2■□□□□ 0.18
PKNOX1P55347 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.2■□□□□ 0.18
PKNOX1P55347 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PKNOX1P55347 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PKNOX1P55347 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.2■□□□□ 0.18
PKNOX1P55347 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.2■□□□□ 0.18
PKNOX1P55347 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PKNOX1P55347 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.2■□□□□ 0.18
PKNOX1P55347 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.2■□□□□ 0.18
PKNOX1P55347 AC107918.2-201ENST00000530817 355 ntBASIC16.2■□□□□ 0.18
PKNOX1P55347 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.2■□□□□ 0.18
PKNOX1P55347 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 AC005412.3-201ENST00000580309 715 ntBASIC16.2■□□□□ 0.18
PKNOX1P55347 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.2■□□□□ 0.18
PKNOX1P55347 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.2■□□□□ 0.18
PKNOX1P55347 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.2■□□□□ 0.18
PKNOX1P55347 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.2■□□□□ 0.18
PKNOX1P55347 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.2■□□□□ 0.18
PKNOX1P55347 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PKNOX1P55347 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.2■□□□□ 0.18
PKNOX1P55347 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.2■□□□□ 0.18
PKNOX1P55347 NFIC-211ENST00000641145 8399 ntBASIC16.2■□□□□ 0.18
PKNOX1P55347 AL596087.1-201ENST00000400979 1969 ntBASIC16.2■□□□□ 0.18
PKNOX1P55347 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.2■□□□□ 0.18
PKNOX1P55347 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PKNOX1P55347 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PKNOX1P55347 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms