Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDH3P22223 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDH3P22223 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDH3P22223 AC132872.4-202ENST00000622924 2756 ntBASIC16.21■□□□□ 0.18
CDH3P22223 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDH3P22223 TUBB8P12-201ENST00000308911 1335 ntBASIC16.2■□□□□ 0.18
CDH3P22223 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH3P22223 TUBB7P-202ENST00000428444 1305 ntBASIC16.2■□□□□ 0.18
CDH3P22223 TUBB8P7-204ENST00000567960 1332 ntBASIC16.2■□□□□ 0.18
CDH3P22223 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDH3P22223 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH3P22223 AC131009.4-201ENST00000624048 1740 ntBASIC16.2■□□□□ 0.18
CDH3P22223 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
CDH3P22223 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 AP006288.1-201ENST00000446065 395 ntBASIC16.2■□□□□ 0.18
CDH3P22223 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.2■□□□□ 0.18
CDH3P22223 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 DUX4L17-201ENST00000557360 1267 ntBASIC16.2■□□□□ 0.18
CDH3P22223 AC087641.1-201ENST00000557561 1021 ntBASIC16.2■□□□□ 0.18
CDH3P22223 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.2■□□□□ 0.18
CDH3P22223 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 AC092902.6-201ENST00000641783 218 ntBASIC16.2■□□□□ 0.18
CDH3P22223 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.2■□□□□ 0.18
CDH3P22223 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CDH3P22223 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDH3P22223 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.19■□□□□ 0.18
CDH3P22223 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
CDH3P22223 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.19■□□□□ 0.18
CDH3P22223 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.19■□□□□ 0.18
CDH3P22223 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CDH3P22223 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 AC254562.1-201ENST00000417586 456 ntBASIC16.19■□□□□ 0.18
CDH3P22223 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.19■□□□□ 0.18
CDH3P22223 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.19■□□□□ 0.18
CDH3P22223 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.19■□□□□ 0.18
CDH3P22223 MPDU1-223ENST00000582151 728 ntBASIC16.19■□□□□ 0.18
CDH3P22223 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.19■□□□□ 0.18
CDH3P22223 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.19■□□□□ 0.18
CDH3P22223 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CDH3P22223 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 AC026691.1-201ENST00000602502 2017 ntBASIC16.19■□□□□ 0.18
CDH3P22223 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.19■□□□□ 0.18
CDH3P22223 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CDH3P22223 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDH3P22223 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.19■□□□□ 0.18
CDH3P22223 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.18■□□□□ 0.18
CDH3P22223 SLC22A20-204ENST00000530038 1673 ntBASIC16.18■□□□□ 0.18
CDH3P22223 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms