Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF40O75150 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.86■□□□□ 0.45
RNF40O75150 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
RNF40O75150 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 KLF4P1-201ENST00000412782 1185 ntBASIC17.86■□□□□ 0.45
RNF40O75150 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF40O75150 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.86■□□□□ 0.45
RNF40O75150 AC018845.2-201ENST00000568326 409 ntBASIC17.86■□□□□ 0.45
RNF40O75150 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
RNF40O75150 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.86■□□□□ 0.45
RNF40O75150 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.86■□□□□ 0.45
RNF40O75150 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.86■□□□□ 0.45
RNF40O75150 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
RNF40O75150 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
RNF40O75150 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
RNF40O75150 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF40O75150 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
RNF40O75150 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
RNF40O75150 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.85■□□□□ 0.45
RNF40O75150 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.85■□□□□ 0.45
RNF40O75150 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
RNF40O75150 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF40O75150 VN2R19P-201ENST00000442399 1052 ntBASIC17.85■□□□□ 0.45
RNF40O75150 KRT18P28-201ENST00000453838 1332 ntBASIC17.85■□□□□ 0.45
RNF40O75150 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.85■□□□□ 0.45
RNF40O75150 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.85■□□□□ 0.45
RNF40O75150 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF40O75150 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF40O75150 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF40O75150 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF40O75150 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 MIR4469-201ENST00000583919 79 ntBASIC17.85■□□□□ 0.45
RNF40O75150 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
RNF40O75150 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF40O75150 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.85■□□□□ 0.45
RNF40O75150 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RNF40O75150 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
RNF40O75150 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.84■□□□□ 0.45
RNF40O75150 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF40O75150 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 AC093525.9-201ENST00000624961 1746 ntBASIC17.84■□□□□ 0.45
RNF40O75150 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF40O75150 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
RNF40O75150 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF40O75150 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
RNF40O75150 METTL21AP1-201ENST00000438852 635 ntBASIC17.84■□□□□ 0.45
RNF40O75150 RPS15P9-201ENST00000494093 319 ntBASIC17.84■□□□□ 0.45
RNF40O75150 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 YBX1P5-201ENST00000509441 847 ntBASIC17.84■□□□□ 0.45
RNF40O75150 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF40O75150 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.84■□□□□ 0.45
RNF40O75150 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.84■□□□□ 0.45
RNF40O75150 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
RNF40O75150 SNHG9-202ENST00000564014 471 ntBASIC17.84■□□□□ 0.45
RNF40O75150 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF40O75150 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF40O75150 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms