Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC068137.2-201ENST00000605408 478 ntBASIC15.67■□□□□ 0.1
PROM1O43490 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
PROM1O43490 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.67■□□□□ 0.1
PROM1O43490 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.67■□□□□ 0.1
PROM1O43490 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PROM1O43490 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PROM1O43490 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PROM1O43490 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.66■□□□□ 0.1
PROM1O43490 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.66■□□□□ 0.1
PROM1O43490 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PROM1O43490 AC079328.2-201ENST00000561241 3354 ntBASIC15.66■□□□□ 0.1
PROM1O43490 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 AL662844.4-201ENST00000606367 2838 ntBASIC15.65■□□□□ 0.1
PROM1O43490 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PROM1O43490 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PROM1O43490 AC006449.5-201ENST00000610658 2098 ntBASIC15.65■□□□□ 0.1
PROM1O43490 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.65■□□□□ 0.1
PROM1O43490 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PROM1O43490 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.65■□□□□ 0.1
PROM1O43490 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.65■□□□□ 0.1
PROM1O43490 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.65■□□□□ 0.1
PROM1O43490 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PROM1O43490 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.65■□□□□ 0.1
PROM1O43490 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PROM1O43490 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms