Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NUP88Q99567 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NUP88Q99567 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.27■□□□□ 0.68
NUP88Q99567 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.27■□□□□ 0.68
NUP88Q99567 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.27■□□□□ 0.68
NUP88Q99567 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NUP88Q99567 PRYP6-201ENST00000514804 343 ntBASIC19.27■□□□□ 0.68
NUP88Q99567 AC105233.2-201ENST00000523697 349 ntBASIC19.27■□□□□ 0.68
NUP88Q99567 AF228730.5-201ENST00000530288 346 ntBASIC19.27■□□□□ 0.68
NUP88Q99567 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP88Q99567 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NUP88Q99567 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.27■□□□□ 0.68
NUP88Q99567 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NUP88Q99567 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.27■□□□□ 0.68
NUP88Q99567 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
NUP88Q99567 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
NUP88Q99567 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
NUP88Q99567 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
NUP88Q99567 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.27■□□□□ 0.67
NUP88Q99567 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NUP88Q99567 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 KRT8P39-201ENST00000396270 1433 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.26■□□□□ 0.67
NUP88Q99567 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NUP88Q99567 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
NUP88Q99567 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
NUP88Q99567 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NUP88Q99567 SPDYE7P-202ENST00000420373 878 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.26■□□□□ 0.67
NUP88Q99567 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.26■□□□□ 0.67
NUP88Q99567 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.26■□□□□ 0.67
NUP88Q99567 AC140878.1-201ENST00000565277 250 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.26■□□□□ 0.67
NUP88Q99567 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.26■□□□□ 0.67
NUP88Q99567 AC073389.1-201ENST00000595595 795 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.26■□□□□ 0.67
NUP88Q99567 AL390754.1-201ENST00000619088 582 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.26■□□□□ 0.67
NUP88Q99567 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
NUP88Q99567 AC106886.4-201ENST00000623557 2502 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 AP3S2-216ENST00000617003 1561 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.26■□□□□ 0.67
NUP88Q99567 AC073439.1-201ENST00000624121 1774 ntBASIC19.26■□□□□ 0.67
NUP88Q99567 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP88Q99567 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NUP88Q99567 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NUP88Q99567 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NUP88Q99567 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
NUP88Q99567 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
NUP88Q99567 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC19.25■□□□□ 0.67
NUP88Q99567 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.25■□□□□ 0.67
NUP88Q99567 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.25■□□□□ 0.67
NUP88Q99567 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
NUP88Q99567 UGT1A2P-201ENST00000454886 866 ntBASIC19.25■□□□□ 0.67
NUP88Q99567 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.25■□□□□ 0.67
NUP88Q99567 IGHV3-42-201ENST00000520410 361 ntBASIC19.25■□□□□ 0.67
NUP88Q99567 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.25■□□□□ 0.67
NUP88Q99567 RARRES2P9-201ENST00000565168 469 ntBASIC19.25■□□□□ 0.67
NUP88Q99567 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.25■□□□□ 0.67
NUP88Q99567 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.25■□□□□ 0.67
NUP88Q99567 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.25■□□□□ 0.67
NUP88Q99567 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
NUP88Q99567 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.25■□□□□ 0.67
NUP88Q99567 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.25■□□□□ 0.67
NUP88Q99567 AL512652.2-201ENST00000625156 1716 ntBASIC19.25■□□□□ 0.67
NUP88Q99567 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
NUP88Q99567 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NUP88Q99567 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NUP88Q99567 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP88Q99567 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUP88Q99567 AL118508.1-201ENST00000613502 2345 ntBASIC19.24■□□□□ 0.67
NUP88Q99567 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUP88Q99567 AC005915.1-201ENST00000624912 2018 ntBASIC19.24■□□□□ 0.67
NUP88Q99567 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NUP88Q99567 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
NUP88Q99567 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.24■□□□□ 0.67
NUP88Q99567 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms