Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CPNE4Q96A23 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CPNE4Q96A23 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.84□□□□□ -0.03
CPNE4Q96A23 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CPNE4Q96A23 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CPNE4Q96A23 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CPNE4Q96A23 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CPNE4Q96A23 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.83□□□□□ -0.03
CPNE4Q96A23 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
CPNE4Q96A23 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CPNE4Q96A23 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CPNE4Q96A23 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.83□□□□□ -0.03
CPNE4Q96A23 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CPNE4Q96A23 GPAA1P2-202ENST00000606848 1787 ntBASIC14.83□□□□□ -0.03
CPNE4Q96A23 AL031731.1-201ENST00000642131 2094 ntBASIC14.83□□□□□ -0.03
CPNE4Q96A23 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC14.83□□□□□ -0.04
CPNE4Q96A23 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 AC004835.2-201ENST00000603762 682 ntBASIC14.83□□□□□ -0.04
CPNE4Q96A23 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 AL513210.1-201ENST00000629608 234 ntBASIC14.83□□□□□ -0.04
CPNE4Q96A23 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.83□□□□□ -0.04
CPNE4Q96A23 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CPNE4Q96A23 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 DNAJB3-202ENST00000449667 1266 ntBASIC14.82□□□□□ -0.04
CPNE4Q96A23 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 IGHV3-62-201ENST00000520057 340 ntBASIC14.82□□□□□ -0.04
CPNE4Q96A23 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 AC022145.2-201ENST00000598203 171 ntBASIC14.82□□□□□ -0.04
CPNE4Q96A23 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CPNE4Q96A23 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CPNE4Q96A23 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 266.6 ms