Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TSEN15P1-201ENST00000423257 515 ntBASIC15.27■□□□□ 0.04
RNF4P78317 FAM58DP-201ENST00000428076 619 ntBASIC15.27■□□□□ 0.04
RNF4P78317 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.27■□□□□ 0.04
RNF4P78317 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.27■□□□□ 0.04
RNF4P78317 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RNF4P78317 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.27■□□□□ 0.04
RNF4P78317 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNF4P78317 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNF4P78317 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.27■□□□□ 0.03
RNF4P78317 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.27■□□□□ 0.03
RNF4P78317 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
RNF4P78317 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
RNF4P78317 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
RNF4P78317 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNF4P78317 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
RNF4P78317 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNF4P78317 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
RNF4P78317 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNF4P78317 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RNF4P78317 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.26■□□□□ 0.03
RNF4P78317 LINC01144-201ENST00000626198 1710 ntBASIC15.26■□□□□ 0.03
RNF4P78317 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RNF4P78317 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.26■□□□□ 0.03
RNF4P78317 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 SLC25A39P2-201ENST00000537614 270 ntBASIC15.26■□□□□ 0.03
RNF4P78317 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.26■□□□□ 0.03
RNF4P78317 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.26■□□□□ 0.03
RNF4P78317 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.26■□□□□ 0.03
RNF4P78317 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.26■□□□□ 0.03
RNF4P78317 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
RNF4P78317 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.26■□□□□ 0.03
RNF4P78317 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RNF4P78317 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RNF4P78317 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNF4P78317 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
RNF4P78317 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.25■□□□□ 0.03
RNF4P78317 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.25■□□□□ 0.03
RNF4P78317 METTL21AP1-201ENST00000438852 635 ntBASIC15.25■□□□□ 0.03
RNF4P78317 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.25■□□□□ 0.03
RNF4P78317 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.25■□□□□ 0.03
RNF4P78317 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 HLA-J-203ENST00000494367 1087 ntBASIC15.25■□□□□ 0.03
RNF4P78317 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
RNF4P78317 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.25■□□□□ 0.03
RNF4P78317 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.25■□□□□ 0.03
RNF4P78317 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.25■□□□□ 0.03
RNF4P78317 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.25■□□□□ 0.03
RNF4P78317 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RNF4P78317 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
RNF4P78317 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNF4P78317 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.25■□□□□ 0.03
RNF4P78317 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms