Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
COL9A1P20849 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL9A1P20849 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.82■□□□□ 0.28
COL9A1P20849 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.82■□□□□ 0.28
COL9A1P20849 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL9A1P20849 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
COL9A1P20849 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.82■□□□□ 0.28
COL9A1P20849 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC16.82■□□□□ 0.28
COL9A1P20849 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.82■□□□□ 0.28
COL9A1P20849 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.82■□□□□ 0.28
COL9A1P20849 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL9A1P20849 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.81■□□□□ 0.28
COL9A1P20849 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL9A1P20849 AC108860.2-201ENST00000562760 2183 ntBASIC16.81■□□□□ 0.28
COL9A1P20849 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
COL9A1P20849 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.81■□□□□ 0.28
COL9A1P20849 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL9A1P20849 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.81■□□□□ 0.28
COL9A1P20849 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.81■□□□□ 0.28
COL9A1P20849 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL9A1P20849 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.81■□□□□ 0.28
COL9A1P20849 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.81■□□□□ 0.28
COL9A1P20849 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.81■□□□□ 0.28
COL9A1P20849 AC021097.1-201ENST00000607902 574 ntBASIC16.81■□□□□ 0.28
COL9A1P20849 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL9A1P20849 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL9A1P20849 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL9A1P20849 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.81■□□□□ 0.28
COL9A1P20849 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.81■□□□□ 0.28
COL9A1P20849 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 AC138028.6-201ENST00000616106 1482 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
COL9A1P20849 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
COL9A1P20849 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
COL9A1P20849 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.8■□□□□ 0.28
COL9A1P20849 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 AC026954.1-201ENST00000429771 1293 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 FNTAP2-201ENST00000430308 634 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 SCARNA20.5-201ENST00000516991 142 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.8■□□□□ 0.28
COL9A1P20849 AC126915.1-201ENST00000522847 1038 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
COL9A1P20849 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.8■□□□□ 0.28
COL9A1P20849 AC020765.3-201ENST00000613051 740 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.8■□□□□ 0.28
COL9A1P20849 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL9A1P20849 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.8■□□□□ 0.28
COL9A1P20849 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
COL9A1P20849 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.8■□□□□ 0.28
COL9A1P20849 CROCCP2-202ENST00000412962 2773 ntBASIC16.8■□□□□ 0.28
COL9A1P20849 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms