Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CXCL1P09341 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.84□□□□□ -0.35
CXCL1P09341 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC12.84□□□□□ -0.35
CXCL1P09341 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC12.84□□□□□ -0.35
CXCL1P09341 HLA-J-202ENST00000469281 1241 ntBASIC12.84□□□□□ -0.35
CXCL1P09341 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC12.84□□□□□ -0.35
CXCL1P09341 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC12.84□□□□□ -0.35
CXCL1P09341 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC12.84□□□□□ -0.35
CXCL1P09341 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC12.84□□□□□ -0.35
CXCL1P09341 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 AC020658.6-201ENST00000623564 1870 ntBASIC12.84□□□□□ -0.35
CXCL1P09341 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.84□□□□□ -0.35
CXCL1P09341 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CXCL1P09341 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CXCL1P09341 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CXCL1P09341 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
CXCL1P09341 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CXCL1P09341 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
CXCL1P09341 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.83□□□□□ -0.35
CXCL1P09341 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.35
CXCL1P09341 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.83□□□□□ -0.35
CXCL1P09341 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CXCL1P09341 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CXCL1P09341 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC12.83□□□□□ -0.36
CXCL1P09341 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.36
CXCL1P09341 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC12.83□□□□□ -0.36
CXCL1P09341 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.83□□□□□ -0.36
CXCL1P09341 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CXCL1P09341 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.83□□□□□ -0.36
CXCL1P09341 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CXCL1P09341 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 MIR1238-201ENST00000408483 83 ntBASIC12.83□□□□□ -0.36
CXCL1P09341 GCSHP5-201ENST00000443090 522 ntBASIC12.83□□□□□ -0.36
CXCL1P09341 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC12.83□□□□□ -0.36
CXCL1P09341 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC12.83□□□□□ -0.36
CXCL1P09341 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
CXCL1P09341 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 PC-208ENST00000529047 1607 ntTSL 3 BASIC12.83□□□□□ -0.36
CXCL1P09341 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.83□□□□□ -0.36
CXCL1P09341 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.83□□□□□ -0.36
CXCL1P09341 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.83□□□□□ -0.36
CXCL1P09341 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CXCL1P09341 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CXCL1P09341 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
CXCL1P09341 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms