Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 AC097637.2-201ENST00000624096 1997 ntBASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CHMP1AQ9HD42 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 MYO15B-237ENST00000642007 4893 ntBASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AC092384.3-202ENST00000564646 2873 ntBASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ACTG1P4-201ENST00000425123 1122 ntBASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AL049597.2-201ENST00000565575 961 ntBASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.3□□□□□ -0.12
CHMP1AQ9HD42 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 INTS4P1-201ENST00000438455 1935 ntBASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 CCS-201ENST00000310190 942 ntTSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms