Protein–RNA interactions for Protein: Q8NE63

HIPK4, Homeodomain-interacting protein kinase 4, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK4Q8NE63 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AC246785.2-201ENST00000432512 513 ntBASIC16.13■□□□□ 0.17
HIPK4Q8NE63 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AC011498.5-201ENST00000592027 486 ntBASIC16.13■□□□□ 0.17
HIPK4Q8NE63 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AL135999.2-201ENST00000622438 1686 ntBASIC16.13■□□□□ 0.17
HIPK4Q8NE63 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HIPK4Q8NE63 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 STK19B-204ENST00000512515 211 ntBASIC16.12■□□□□ 0.17
HIPK4Q8NE63 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 AC009533.2-201ENST00000543664 586 ntBASIC16.12■□□□□ 0.17
HIPK4Q8NE63 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 AC009336.1-201ENST00000608941 1553 ntBASIC16.12■□□□□ 0.17
HIPK4Q8NE63 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HIPK4Q8NE63 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HIPK4Q8NE63 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms