Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TNFP01375 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.06■□□□□ 0.16
TNFP01375 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TNFP01375 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TNFP01375 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TNFP01375 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TNFP01375 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.06■□□□□ 0.16
TNFP01375 UGT1A2P-201ENST00000454886 866 ntBASIC16.06■□□□□ 0.16
TNFP01375 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.06■□□□□ 0.16
TNFP01375 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.06■□□□□ 0.16
TNFP01375 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.06■□□□□ 0.16
TNFP01375 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TNFP01375 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.06■□□□□ 0.16
TNFP01375 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TNFP01375 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TNFP01375 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.06■□□□□ 0.16
TNFP01375 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TNFP01375 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TNFP01375 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.05■□□□□ 0.16
TNFP01375 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 LINC01144-201ENST00000626198 1710 ntBASIC16.05■□□□□ 0.16
TNFP01375 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 LETM1P2-201ENST00000597330 2178 ntBASIC16.05■□□□□ 0.16
TNFP01375 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 AC236430.1-201ENST00000402231 743 ntBASIC16.05■□□□□ 0.16
TNFP01375 AL035633.1-201ENST00000406139 838 ntBASIC16.05■□□□□ 0.16
TNFP01375 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.05■□□□□ 0.16
TNFP01375 AC002472.2-201ENST00000442739 958 ntBASIC16.05■□□□□ 0.16
TNFP01375 FAM207CP-201ENST00000443486 507 ntBASIC16.05■□□□□ 0.16
TNFP01375 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
TNFP01375 COX20P2-201ENST00000452636 358 ntBASIC16.05■□□□□ 0.16
TNFP01375 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.05■□□□□ 0.16
TNFP01375 AC004890.2-204ENST00000481968 304 ntBASIC16.05■□□□□ 0.16
TNFP01375 TERF1P3-201ENST00000505638 1227 ntBASIC16.05■□□□□ 0.16
TNFP01375 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.05■□□□□ 0.16
TNFP01375 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.05■□□□□ 0.16
TNFP01375 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.05■□□□□ 0.16
TNFP01375 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
TNFP01375 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.05■□□□□ 0.16
TNFP01375 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.05■□□□□ 0.16
TNFP01375 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TNFP01375 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.04■□□□□ 0.16
TNFP01375 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.04■□□□□ 0.16
TNFP01375 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.04■□□□□ 0.16
TNFP01375 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TNFP01375 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.04■□□□□ 0.16
TNFP01375 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms