Protein–RNA interactions for Protein: Q9Y446

PKP3, Plakophilin-3, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3Q9Y446 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.62■□□□□ 0.25
PKP3Q9Y446 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.62■□□□□ 0.25
PKP3Q9Y446 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.62■□□□□ 0.25
PKP3Q9Y446 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.62■□□□□ 0.25
PKP3Q9Y446 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PKP3Q9Y446 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKP3Q9Y446 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKP3Q9Y446 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKP3Q9Y446 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKP3Q9Y446 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKP3Q9Y446 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.62■□□□□ 0.25
PKP3Q9Y446 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKP3Q9Y446 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKP3Q9Y446 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 AC092919.2-201ENST00000623631 1645 ntBASIC16.61■□□□□ 0.25
PKP3Q9Y446 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 PGAM5P1-201ENST00000518923 814 ntBASIC16.61■□□□□ 0.25
PKP3Q9Y446 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 AL671883.3-201ENST00000603274 991 ntBASIC16.61■□□□□ 0.25
PKP3Q9Y446 AL161645.1-201ENST00000622716 1255 ntBASIC16.61■□□□□ 0.25
PKP3Q9Y446 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 PCGF3-213ENST00000620529 1899 ntBASIC16.61■□□□□ 0.25
PKP3Q9Y446 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.61■□□□□ 0.25
PKP3Q9Y446 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKP3Q9Y446 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 AC092474.2-201ENST00000424288 719 ntBASIC16.6■□□□□ 0.25
PKP3Q9Y446 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 AP002472.1-201ENST00000577490 586 ntBASIC16.6■□□□□ 0.25
PKP3Q9Y446 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKP3Q9Y446 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.6■□□□□ 0.25
PKP3Q9Y446 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms