Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 TUBB3P1-201ENST00000405796 1332 ntBASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 PRYP6-201ENST00000514804 343 ntBASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 AC069262.1-201ENST00000539058 672 ntBASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CHMP3Q9Y3E7 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP3Q9Y3E7 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AC105020.1-201ENST00000435356 2205 ntBASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AC067863.1-201ENST00000494933 530 ntBASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AC084018.2-201ENST00000613093 2607 ntBASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.64■□□□□ 0.89
CHMP3Q9Y3E7 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 MIR346-201ENST00000362234 95 ntBASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 CD81-202ENST00000381036 880 ntTSL 3 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 AC125807.1-201ENST00000483097 614 ntBASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 AC105233.2-201ENST00000523697 349 ntBASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 AF228730.5-201ENST00000530288 346 ntBASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC20.63■□□□□ 0.89
CHMP3Q9Y3E7 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP3Q9Y3E7 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.62■□□□□ 0.89
CHMP3Q9Y3E7 OVCH1-AS1-204ENST00000641955 5529 ntBASIC20.62■□□□□ 0.89
CHMP3Q9Y3E7 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms