Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC21.3■■□□□ 1
PDZRN3Q9UPQ7 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 HLA-A-202ENST00000376806 1854 ntBASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 SPCS2P4-201ENST00000436160 681 ntBASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 IGHV3-62-201ENST00000520057 340 ntBASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC21.29■■□□□ 1
PDZRN3Q9UPQ7 AC006449.5-201ENST00000610658 2098 ntBASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 AC107918.2-201ENST00000530817 355 ntBASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 LINC01225-203ENST00000563550 1244 ntBASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 LINC02560-201ENST00000596379 459 ntBASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC21.28■■□□□ 1
PDZRN3Q9UPQ7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 CR383656.12-201ENST00000549567 513 ntBASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC21.27■■□□□ 1
PDZRN3Q9UPQ7 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PDZRN3Q9UPQ7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
PDZRN3Q9UPQ7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
PDZRN3Q9UPQ7 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
PDZRN3Q9UPQ7 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC21.27■□□□□ 0.99
PDZRN3Q9UPQ7 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 FO538757.1-201ENST00000623083 1397 ntBASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PDZRN3Q9UPQ7 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms