Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.32■□□□□ 0.52
HPS3Q969F9 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.32■□□□□ 0.52
HPS3Q969F9 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.32■□□□□ 0.52
HPS3Q969F9 MIR574-201ENST00000385209 96 ntBASIC18.32■□□□□ 0.52
HPS3Q969F9 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.32■□□□□ 0.52
HPS3Q969F9 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HPS3Q969F9 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.32■□□□□ 0.52
HPS3Q969F9 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.32■□□□□ 0.52
HPS3Q969F9 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.32■□□□□ 0.52
HPS3Q969F9 AL596087.1-201ENST00000400979 1969 ntBASIC18.31■□□□□ 0.52
HPS3Q969F9 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.31■□□□□ 0.52
HPS3Q969F9 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
HPS3Q969F9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.31■□□□□ 0.52
HPS3Q969F9 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.31■□□□□ 0.52
HPS3Q969F9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HPS3Q969F9 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.31■□□□□ 0.52
HPS3Q969F9 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.31■□□□□ 0.52
HPS3Q969F9 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.31■□□□□ 0.52
HPS3Q969F9 RNA5SP416-201ENST00000516838 111 ntBASIC18.31■□□□□ 0.52
HPS3Q969F9 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.31■□□□□ 0.52
HPS3Q969F9 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.31■□□□□ 0.52
HPS3Q969F9 PDPK2P-202ENST00000562415 1191 ntBASIC18.31■□□□□ 0.52
HPS3Q969F9 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.31■□□□□ 0.52
HPS3Q969F9 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.31■□□□□ 0.52
HPS3Q969F9 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.31■□□□□ 0.52
HPS3Q969F9 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HPS3Q969F9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HPS3Q969F9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.31■□□□□ 0.52
HPS3Q969F9 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HPS3Q969F9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.3■□□□□ 0.52
HPS3Q969F9 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HPS3Q969F9 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.3■□□□□ 0.52
HPS3Q969F9 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.3■□□□□ 0.52
HPS3Q969F9 LINC01144-201ENST00000626198 1710 ntBASIC18.3■□□□□ 0.52
HPS3Q969F9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 PMS2P4-201ENST00000412466 1052 ntBASIC18.3■□□□□ 0.52
HPS3Q969F9 AC092474.2-201ENST00000424288 719 ntBASIC18.3■□□□□ 0.52
HPS3Q969F9 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.3■□□□□ 0.52
HPS3Q969F9 AC140658.5-201ENST00000438532 169 ntBASIC18.3■□□□□ 0.52
HPS3Q969F9 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.3■□□□□ 0.52
HPS3Q969F9 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.3■□□□□ 0.52
HPS3Q969F9 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.3■□□□□ 0.52
HPS3Q969F9 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 FAM197Y3-203ENST00000618346 717 ntBASIC18.3■□□□□ 0.52
HPS3Q969F9 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 CICP6-201ENST00000457191 2729 ntBASIC18.3■□□□□ 0.52
HPS3Q969F9 AC016027.1-202ENST00000607927 1699 ntBASIC18.3■□□□□ 0.52
HPS3Q969F9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.3■□□□□ 0.52
HPS3Q969F9 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HPS3Q969F9 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.29■□□□□ 0.52
HPS3Q969F9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HPS3Q969F9 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.29■□□□□ 0.52
HPS3Q969F9 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.29■□□□□ 0.52
HPS3Q969F9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms