Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
USP46P62068 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
USP46P62068 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
USP46P62068 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.4■□□□□ 0.38
USP46P62068 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.4■□□□□ 0.38
USP46P62068 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.4■□□□□ 0.38
USP46P62068 AC142381.1-201ENST00000426099 345 ntBASIC17.4■□□□□ 0.38
USP46P62068 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.4■□□□□ 0.38
USP46P62068 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.4■□□□□ 0.38
USP46P62068 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 AP001059.3-201ENST00000619053 235 ntBASIC17.4■□□□□ 0.38
USP46P62068 PCDH8P1-201ENST00000428983 2773 ntBASIC17.4■□□□□ 0.38
USP46P62068 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.4■□□□□ 0.38
USP46P62068 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP46P62068 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.4■□□□□ 0.38
USP46P62068 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.4■□□□□ 0.38
USP46P62068 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
USP46P62068 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.38
USP46P62068 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.39■□□□□ 0.38
USP46P62068 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 FOXO1B-201ENST00000504678 1527 ntBASIC17.39■□□□□ 0.37
USP46P62068 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.39■□□□□ 0.37
USP46P62068 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.39■□□□□ 0.37
USP46P62068 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 AL512356.2-201ENST00000546955 174 ntBASIC17.39■□□□□ 0.37
USP46P62068 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.39■□□□□ 0.37
USP46P62068 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 Z99916.3-201ENST00000623422 1080 ntBASIC17.39■□□□□ 0.37
USP46P62068 AL139011.1-202ENST00000642063 584 ntBASIC17.39■□□□□ 0.37
USP46P62068 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
USP46P62068 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.39■□□□□ 0.37
USP46P62068 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.39■□□□□ 0.37
USP46P62068 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP46P62068 AC103702.1-201ENST00000548801 2630 ntBASIC17.38■□□□□ 0.37
USP46P62068 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP46P62068 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.38■□□□□ 0.37
USP46P62068 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.38■□□□□ 0.37
USP46P62068 AP002490.2-201ENST00000524791 560 ntBASIC17.38■□□□□ 0.37
USP46P62068 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.38■□□□□ 0.37
USP46P62068 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
USP46P62068 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP46P62068 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.38■□□□□ 0.37
USP46P62068 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.38■□□□□ 0.37
USP46P62068 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
USP46P62068 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms