Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
COL18A1P39060 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 TIMM17BP1-201ENST00000545713 516 ntBASIC21.4■■□□□ 1.02
COL18A1P39060 AL359711.2-201ENST00000563105 872 ntBASIC21.4■■□□□ 1.02
COL18A1P39060 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC21.4■■□□□ 1.02
COL18A1P39060 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC21.4■■□□□ 1.02
COL18A1P39060 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL18A1P39060 HLA-A-202ENST00000376806 1854 ntBASIC21.39■■□□□ 1.02
COL18A1P39060 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC21.39■■□□□ 1.02
COL18A1P39060 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
COL18A1P39060 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL18A1P39060 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.02
COL18A1P39060 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL18A1P39060 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC21.39■■□□□ 1.01
COL18A1P39060 KLF2P4-201ENST00000451959 1225 ntBASIC21.39■■□□□ 1.01
COL18A1P39060 FAM86LP-201ENST00000478302 853 ntBASIC21.39■■□□□ 1.01
COL18A1P39060 FXR1-221ENST00000491674 365 ntTSL 2 BASIC21.39■■□□□ 1.01
COL18A1P39060 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC21.39■■□□□ 1.01
COL18A1P39060 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC21.39■■□□□ 1.01
COL18A1P39060 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
COL18A1P39060 AC244669.2-201ENST00000612320 853 ntBASIC21.39■■□□□ 1.01
COL18A1P39060 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
COL18A1P39060 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.39■■□□□ 1.01
COL18A1P39060 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL18A1P39060 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC21.39■■□□□ 1.01
COL18A1P39060 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL18A1P39060 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
COL18A1P39060 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL18A1P39060 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC21.39■■□□□ 1.01
COL18A1P39060 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC21.38■■□□□ 1.01
COL18A1P39060 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC21.38■■□□□ 1.01
COL18A1P39060 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 CD74-212ENST00000524315 584 ntTSL 5 BASIC21.38■■□□□ 1.01
COL18A1P39060 TDH-203ENST00000531764 1110 ntBASIC21.38■■□□□ 1.01
COL18A1P39060 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC21.38■■□□□ 1.01
COL18A1P39060 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC21.38■■□□□ 1.01
COL18A1P39060 APRT-204ENST00000563655 709 ntTSL 5 BASIC21.38■■□□□ 1.01
COL18A1P39060 PIGL-212ENST00000581006 554 ntTSL 4 BASIC21.38■■□□□ 1.01
COL18A1P39060 AL022328.1-201ENST00000610050 478 ntBASIC21.38■■□□□ 1.01
COL18A1P39060 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC21.38■■□□□ 1.01
COL18A1P39060 AL691432.1-201ENST00000596308 1422 ntBASIC21.38■■□□□ 1.01
COL18A1P39060 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 AC020907.1-201ENST00000616460 1350 ntBASIC21.38■■□□□ 1.01
COL18A1P39060 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 APOA1-205ENST00000375329 927 ntTSL 2 BASIC21.38■■□□□ 1.01
COL18A1P39060 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC21.38■■□□□ 1.01
COL18A1P39060 MIR1247-201ENST00000408206 136 ntBASIC21.38■■□□□ 1.01
COL18A1P39060 FO681548.1-201ENST00000455617 1132 ntBASIC21.38■■□□□ 1.01
COL18A1P39060 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC21.38■■□□□ 1.01
COL18A1P39060 AC106760.1-201ENST00000508690 800 ntBASIC21.38■■□□□ 1.01
COL18A1P39060 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL18A1P39060 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.38■■□□□ 1.01
COL18A1P39060 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL18A1P39060 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.37■■□□□ 1.01
COL18A1P39060 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC21.37■■□□□ 1.01
COL18A1P39060 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.37■■□□□ 1.01
COL18A1P39060 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
COL18A1P39060 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
COL18A1P39060 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC21.37■■□□□ 1.01
COL18A1P39060 PKIG-203ENST00000372887 769 ntTSL 3 BASIC21.37■■□□□ 1.01
COL18A1P39060 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC21.37■■□□□ 1.01
COL18A1P39060 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC21.37■■□□□ 1.01
COL18A1P39060 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC21.37■■□□□ 1.01
COL18A1P39060 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC21.37■■□□□ 1.01
COL18A1P39060 AC120045.2-201ENST00000567334 178 ntBASIC21.37■■□□□ 1.01
COL18A1P39060 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC21.37■■□□□ 1.01
COL18A1P39060 AC133539.2-201ENST00000604757 467 ntBASIC21.37■■□□□ 1.01
COL18A1P39060 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC21.37■■□□□ 1.01
COL18A1P39060 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.37■■□□□ 1.01
COL18A1P39060 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL18A1P39060 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.36■■□□□ 1.01
COL18A1P39060 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL18A1P39060 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.36■■□□□ 1.01
COL18A1P39060 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC21.36■■□□□ 1.01
COL18A1P39060 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms