Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SIX3O95343 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 AF186996.4-201ENST00000467186 377 ntBASIC16.2■□□□□ 0.18
SIX3O95343 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.2■□□□□ 0.18
SIX3O95343 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.2■□□□□ 0.18
SIX3O95343 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
SIX3O95343 AC005593.1-201ENST00000624894 515 ntBASIC16.2■□□□□ 0.18
SIX3O95343 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SIX3O95343 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.2■□□□□ 0.18
SIX3O95343 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.2■□□□□ 0.18
SIX3O95343 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SIX3O95343 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 LINC01144-201ENST00000626198 1710 ntBASIC16.19■□□□□ 0.18
SIX3O95343 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.19■□□□□ 0.18
SIX3O95343 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SIX3O95343 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.19■□□□□ 0.18
SIX3O95343 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 MRPL20P1-201ENST00000400819 433 ntBASIC16.19■□□□□ 0.18
SIX3O95343 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 AC010654.1-201ENST00000615722 808 ntBASIC16.19■□□□□ 0.18
SIX3O95343 AC117500.6-201ENST00000624871 588 ntBASIC16.19■□□□□ 0.18
SIX3O95343 FAM215A-202ENST00000632077 792 ntBASIC16.19■□□□□ 0.18
SIX3O95343 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.19■□□□□ 0.18
SIX3O95343 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SIX3O95343 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.19■□□□□ 0.18
SIX3O95343 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.18■□□□□ 0.18
SIX3O95343 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SIX3O95343 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.18■□□□□ 0.18
SIX3O95343 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.18■□□□□ 0.18
SIX3O95343 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.18■□□□□ 0.18
SIX3O95343 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SIX3O95343 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.18■□□□□ 0.18
SIX3O95343 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
SIX3O95343 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.18■□□□□ 0.18
SIX3O95343 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.18■□□□□ 0.18
SIX3O95343 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SIX3O95343 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SIX3O95343 AL049840.3-201ENST00000602669 611 ntBASIC16.18■□□□□ 0.18
SIX3O95343 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SIX3O95343 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms