Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 OR7E47P-204ENST00000575924 449 ntBASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 AL365209.1-201ENST00000624418 6473 ntBASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HIF3AQ9Y2N7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 AC022188.1-201ENST00000620960 1664 ntBASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 AC010654.1-201ENST00000615722 808 ntBASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 AL691432.3-201ENST00000621860 400 ntBASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 FAM215A-202ENST00000632077 792 ntBASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.97□□□□□ -0.01
HIF3AQ9Y2N7 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 AC079781.3-201ENST00000449110 356 ntBASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 AC020765.3-201ENST00000613051 740 ntBASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 AC004790.2-201ENST00000623588 572 ntBASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 AC148477.8-201ENST00000624298 468 ntBASIC14.96□□□□□ -0.01
HIF3AQ9Y2N7 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms