Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 SPDYE7P-202ENST00000420373 878 ntBASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 BASP1P1-201ENST00000430708 665 ntBASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 AC026150.2-201ENST00000564693 1156 ntBASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 AL158211.3-201ENST00000607385 239 ntBASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 AC046158.3-201ENST00000624947 2558 ntBASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 IGHV3-62-201ENST00000520057 340 ntBASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 HTR7P1-202ENST00000624664 4411 ntBASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 AC006538.1-201ENST00000567905 1585 ntBASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC20.03■□□□□ 0.8
RPAP1Q9BWH6 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 MIR943-201ENST00000401286 94 ntBASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 AC008267.7-201ENST00000624570 1194 ntBASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RPAP1Q9BWH6 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
RPAP1Q9BWH6 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
RPAP1Q9BWH6 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RPAP1Q9BWH6 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.79
RPAP1Q9BWH6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
RPAP1Q9BWH6 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms