Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM56Q9BRZ2 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM56Q9BRZ2 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM56Q9BRZ2 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
TRIM56Q9BRZ2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
TRIM56Q9BRZ2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
TRIM56Q9BRZ2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRIM56Q9BRZ2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 SLC22A20-204ENST00000530038 1673 ntBASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.95■□□□□ 0.3
TRIM56Q9BRZ2 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 AC004870.1-201ENST00000315132 882 ntBASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 PMS2P1-201ENST00000431037 1228 ntBASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 RPS2P1-201ENST00000434010 821 ntBASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 HLA-J-202ENST00000469281 1241 ntBASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 TP73-AS1-207ENST00000624167 988 ntBASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 AL596257.1-201ENST00000641463 2694 ntBASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM56Q9BRZ2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms