Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.12■□□□□ 0.01
NPAS1Q99742 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NPAS1Q99742 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NPAS1Q99742 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.12■□□□□ 0.01
NPAS1Q99742 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NPAS1Q99742 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NPAS1Q99742 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.12■□□□□ 0.01
NPAS1Q99742 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NPAS1Q99742 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.12■□□□□ 0.01
NPAS1Q99742 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
NPAS1Q99742 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NPAS1Q99742 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
NPAS1Q99742 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NPAS1Q99742 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.12■□□□□ 0.01
NPAS1Q99742 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.12■□□□□ 0.01
NPAS1Q99742 GGT4P-201ENST00000623672 1708 ntBASIC15.12■□□□□ 0.01
NPAS1Q99742 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NPAS1Q99742 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
NPAS1Q99742 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.11■□□□□ 0.01
NPAS1Q99742 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
NPAS1Q99742 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.11■□□□□ 0.01
NPAS1Q99742 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
NPAS1Q99742 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.11■□□□□ 0.01
NPAS1Q99742 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.11■□□□□ 0.01
NPAS1Q99742 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
NPAS1Q99742 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.11■□□□□ 0.01
NPAS1Q99742 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.11■□□□□ 0.01
NPAS1Q99742 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.11■□□□□ 0.01
NPAS1Q99742 AL009183.1-201ENST00000603760 355 ntBASIC15.11■□□□□ 0.01
NPAS1Q99742 AC099522.2-201ENST00000607001 744 ntBASIC15.11■□□□□ 0.01
NPAS1Q99742 AP001350.2-201ENST00000625104 1094 ntBASIC15.11■□□□□ 0.01
NPAS1Q99742 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
NPAS1Q99742 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 HYMAI-201ENST00000635591 3347 ntBASIC15.11■□□□□ 0.01
NPAS1Q99742 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
NPAS1Q99742 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
NPAS1Q99742 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.11■□□□□ 0.01
NPAS1Q99742 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NPAS1Q99742 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NPAS1Q99742 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.1■□□□□ 0.01
NPAS1Q99742 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.1■□□□□ 0.01
NPAS1Q99742 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.1■□□□□ 0.01
NPAS1Q99742 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NPAS1Q99742 DOC2GP-204ENST00000639052 2548 ntBASIC15.1■□□□□ 0.01
NPAS1Q99742 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.1■□□□□ 0.01
NPAS1Q99742 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
NPAS1Q99742 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NPAS1Q99742 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
NPAS1Q99742 BX842568.4-201ENST00000421222 227 ntBASIC15.1■□□□□ 0.01
NPAS1Q99742 FAM58CP-201ENST00000435741 640 ntBASIC15.1■□□□□ 0.01
NPAS1Q99742 AC112482.1-201ENST00000492080 688 ntBASIC15.1■□□□□ 0.01
NPAS1Q99742 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NPAS1Q99742 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.1■□□□□ 0.01
NPAS1Q99742 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.1■□□□□ 0.01
NPAS1Q99742 AC092865.5-201ENST00000545435 363 ntBASIC15.1■□□□□ 0.01
NPAS1Q99742 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.1■□□□□ 0.01
NPAS1Q99742 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms