Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH12P55289 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH12P55289 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH12P55289 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH12P55289 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.49■□□□□ 0.07
CDH12P55289 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH12P55289 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.49■□□□□ 0.07
CDH12P55289 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH12P55289 AL355877.3-201ENST00000622820 899 ntBASIC15.49■□□□□ 0.07
CDH12P55289 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH12P55289 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH12P55289 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH12P55289 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH12P55289 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH12P55289 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH12P55289 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH12P55289 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH12P55289 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH12P55289 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CDH12P55289 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH12P55289 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH12P55289 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH12P55289 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
CDH12P55289 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH12P55289 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH12P55289 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CDH12P55289 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
CDH12P55289 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.48■□□□□ 0.07
CDH12P55289 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 TSPY19P-201ENST00000418461 509 ntBASIC15.48■□□□□ 0.07
CDH12P55289 TSPY18P-201ENST00000441642 509 ntBASIC15.48■□□□□ 0.07
CDH12P55289 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH12P55289 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH12P55289 AC091304.2-201ENST00000564639 760 ntBASIC15.48■□□□□ 0.07
CDH12P55289 AL139424.1-201ENST00000607572 797 ntBASIC15.48■□□□□ 0.07
CDH12P55289 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH12P55289 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 AL589182.2-201ENST00000619332 1049 ntBASIC15.48■□□□□ 0.07
CDH12P55289 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
CDH12P55289 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH12P55289 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
CDH12P55289 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH12P55289 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH12P55289 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.48■□□□□ 0.07
CDH12P55289 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH12P55289 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.48■□□□□ 0.07
CDH12P55289 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CDH12P55289 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CDH12P55289 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH12P55289 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CDH12P55289 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
CDH12P55289 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CDH12P55289 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.47■□□□□ 0.07
CDH12P55289 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH12P55289 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms