Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKNO60260 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.42■□□□□ 0.06
PRKNO60260 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PRKNO60260 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.42■□□□□ 0.06
PRKNO60260 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.42■□□□□ 0.06
PRKNO60260 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.42■□□□□ 0.06
PRKNO60260 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.42■□□□□ 0.06
PRKNO60260 AC020916.1-201ENST00000587762 1774 ntBASIC15.41■□□□□ 0.06
PRKNO60260 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PRKNO60260 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 AP002490.2-201ENST00000524791 560 ntBASIC15.41■□□□□ 0.06
PRKNO60260 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 AC093520.2-201ENST00000561830 333 ntBASIC15.41■□□□□ 0.06
PRKNO60260 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.41■□□□□ 0.06
PRKNO60260 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
PRKNO60260 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 LINC02199-201ENST00000506655 2702 ntBASIC15.41■□□□□ 0.06
PRKNO60260 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 WASH6P-202ENST00000359512 1437 ntBASIC15.41■□□□□ 0.06
PRKNO60260 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PRKNO60260 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PRKNO60260 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
PRKNO60260 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKNO60260 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
PRKNO60260 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 SPCS2P4-201ENST00000436160 681 ntBASIC15.4■□□□□ 0.06
PRKNO60260 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 FAM86C2P-203ENST00000528684 1004 ntBASIC15.4■□□□□ 0.06
PRKNO60260 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
PRKNO60260 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 AC021097.1-201ENST00000607902 574 ntBASIC15.4■□□□□ 0.06
PRKNO60260 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.4■□□□□ 0.06
PRKNO60260 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.4■□□□□ 0.06
PRKNO60260 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKNO60260 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms