Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
DEPDC4Q8N2C3 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 TCAF2P1-201ENST00000291129 2421 ntBASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 UNC93B7-201ENST00000509439 705 ntBASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
DEPDC4Q8N2C3 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 AL049757.1-201ENST00000616842 1596 ntBASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
DEPDC4Q8N2C3 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms