Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.86□□□□□ -0.03
SCN1BQ07699 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.86□□□□□ -0.03
SCN1BQ07699 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.86□□□□□ -0.03
SCN1BQ07699 IGHV3-41-201ENST00000613121 348 ntBASIC14.86□□□□□ -0.03
SCN1BQ07699 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.86□□□□□ -0.03
SCN1BQ07699 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.86□□□□□ -0.03
SCN1BQ07699 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SCN1BQ07699 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.86□□□□□ -0.03
SCN1BQ07699 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.86□□□□□ -0.03
SCN1BQ07699 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SCN1BQ07699 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.85□□□□□ -0.03
SCN1BQ07699 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.85□□□□□ -0.03
SCN1BQ07699 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.85□□□□□ -0.03
SCN1BQ07699 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SCN1BQ07699 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SCN1BQ07699 SPDYE13P-201ENST00000445314 798 ntBASIC14.85□□□□□ -0.03
SCN1BQ07699 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
SCN1BQ07699 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.85□□□□□ -0.03
SCN1BQ07699 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.85□□□□□ -0.03
SCN1BQ07699 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.85□□□□□ -0.03
SCN1BQ07699 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
SCN1BQ07699 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
SCN1BQ07699 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.85□□□□□ -0.03
SCN1BQ07699 AL596087.1-201ENST00000400979 1969 ntBASIC14.85□□□□□ -0.03
SCN1BQ07699 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SCN1BQ07699 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.85□□□□□ -0.03
SCN1BQ07699 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.84□□□□□ -0.03
SCN1BQ07699 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SCN1BQ07699 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.84□□□□□ -0.03
SCN1BQ07699 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.84□□□□□ -0.03
SCN1BQ07699 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.84□□□□□ -0.03
SCN1BQ07699 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SCN1BQ07699 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SCN1BQ07699 SAPCD2P2-201ENST00000431719 1174 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms