Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VCPP55072 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
VCPP55072 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VCPP55072 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VCPP55072 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.78■□□□□ 0.44
VCPP55072 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.78■□□□□ 0.44
VCPP55072 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VCPP55072 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VCPP55072 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.78■□□□□ 0.44
VCPP55072 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.78■□□□□ 0.44
VCPP55072 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VCPP55072 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VCPP55072 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.78■□□□□ 0.44
VCPP55072 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VCPP55072 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 ADH5P3-201ENST00000433842 1137 ntBASIC17.78■□□□□ 0.44
VCPP55072 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VCPP55072 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.78■□□□□ 0.44
VCPP55072 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.78■□□□□ 0.44
VCPP55072 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.78■□□□□ 0.44
VCPP55072 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.78■□□□□ 0.44
VCPP55072 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.78■□□□□ 0.44
VCPP55072 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VCPP55072 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.78■□□□□ 0.44
VCPP55072 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCPP55072 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.77■□□□□ 0.44
VCPP55072 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.77■□□□□ 0.44
VCPP55072 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
VCPP55072 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.77■□□□□ 0.44
VCPP55072 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
VCPP55072 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
VCPP55072 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
VCPP55072 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.77■□□□□ 0.44
VCPP55072 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.77■□□□□ 0.44
VCPP55072 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.77■□□□□ 0.44
VCPP55072 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.77■□□□□ 0.44
VCPP55072 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.77■□□□□ 0.44
VCPP55072 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.77■□□□□ 0.44
VCPP55072 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.77■□□□□ 0.44
VCPP55072 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.77■□□□□ 0.44
VCPP55072 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
VCPP55072 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.77■□□□□ 0.44
VCPP55072 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCPP55072 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VCPP55072 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCPP55072 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.77■□□□□ 0.43
VCPP55072 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCPP55072 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VCPP55072 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.76■□□□□ 0.43
VCPP55072 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.76■□□□□ 0.43
VCPP55072 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.76■□□□□ 0.43
VCPP55072 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.76■□□□□ 0.43
VCPP55072 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.76■□□□□ 0.43
VCPP55072 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.76■□□□□ 0.43
VCPP55072 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.76■□□□□ 0.43
VCPP55072 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCPP55072 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.76■□□□□ 0.43
VCPP55072 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms