Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.75■□□□□ 0.75
BRCA1P38398 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.75■□□□□ 0.75
BRCA1P38398 AC245100.5-201ENST00000452108 331 ntBASIC19.75■□□□□ 0.75
BRCA1P38398 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
BRCA1P38398 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.75■□□□□ 0.75
BRCA1P38398 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BRCA1P38398 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
BRCA1P38398 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
BRCA1P38398 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
BRCA1P38398 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
BRCA1P38398 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 AL512652.2-201ENST00000625156 1716 ntBASIC19.74■□□□□ 0.75
BRCA1P38398 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 AC074338.1-201ENST00000416825 156 ntBASIC19.74■□□□□ 0.75
BRCA1P38398 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.74■□□□□ 0.75
BRCA1P38398 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.74■□□□□ 0.75
BRCA1P38398 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.74■□□□□ 0.75
BRCA1P38398 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 AC097724.1-201ENST00000609581 426 ntBASIC19.74■□□□□ 0.75
BRCA1P38398 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
BRCA1P38398 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.74■□□□□ 0.75
BRCA1P38398 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BRCA1P38398 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
BRCA1P38398 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.75
BRCA1P38398 AC104457.1-201ENST00000401024 814 ntBASIC19.73■□□□□ 0.75
BRCA1P38398 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.73■□□□□ 0.75
BRCA1P38398 AL022328.3-201ENST00000607943 679 ntBASIC19.73■□□□□ 0.75
BRCA1P38398 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
BRCA1P38398 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
BRCA1P38398 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.73■□□□□ 0.75
BRCA1P38398 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 KRT18P64-201ENST00000434946 1219 ntBASIC19.73■□□□□ 0.75
BRCA1P38398 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.73■□□□□ 0.75
BRCA1P38398 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.73■□□□□ 0.75
BRCA1P38398 UPF3AP2-201ENST00000457924 1132 ntBASIC19.73■□□□□ 0.75
BRCA1P38398 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BRCA1P38398 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.72■□□□□ 0.75
BRCA1P38398 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
BRCA1P38398 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.72■□□□□ 0.75
BRCA1P38398 AC138028.6-201ENST00000616106 1482 ntBASIC19.72■□□□□ 0.75
BRCA1P38398 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 NUS1P3-201ENST00000423502 862 ntBASIC19.72■□□□□ 0.75
BRCA1P38398 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.72■□□□□ 0.75
BRCA1P38398 AC093433.1-201ENST00000458048 571 ntBASIC19.72■□□□□ 0.75
BRCA1P38398 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.72■□□□□ 0.75
BRCA1P38398 RPL13AP25-201ENST00000484130 612 ntBASIC19.72■□□□□ 0.75
BRCA1P38398 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.72■□□□□ 0.75
BRCA1P38398 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.72■□□□□ 0.75
BRCA1P38398 ENPP7P5-201ENST00000541031 1031 ntBASIC19.72■□□□□ 0.75
BRCA1P38398 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.72■□□□□ 0.75
BRCA1P38398 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.72■□□□□ 0.75
BRCA1P38398 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC19.72■□□□□ 0.75
BRCA1P38398 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
BRCA1P38398 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.72■□□□□ 0.75
BRCA1P38398 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.72■□□□□ 0.75
BRCA1P38398 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
BRCA1P38398 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
BRCA1P38398 AC104581.1-202ENST00000635932 2618 ntBASIC19.72■□□□□ 0.75
BRCA1P38398 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
BRCA1P38398 AC134312.5-201ENST00000568031 1313 ntBASIC19.72■□□□□ 0.75
BRCA1P38398 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms