Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.2■□□□□ 0.18
HDAC3O15379 AC144831.1-201ENST00000573312 2656 ntBASIC16.2■□□□□ 0.18
HDAC3O15379 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
HDAC3O15379 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 AC022532.1-201ENST00000624563 1728 ntBASIC16.19■□□□□ 0.18
HDAC3O15379 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 DBET-201ENST00000630918 3363 ntBASIC16.19■□□□□ 0.18
HDAC3O15379 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HDAC3O15379 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
HDAC3O15379 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.19■□□□□ 0.18
HDAC3O15379 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 FAM86EP-206ENST00000510506 987 ntBASIC16.19■□□□□ 0.18
HDAC3O15379 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.19■□□□□ 0.18
HDAC3O15379 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.19■□□□□ 0.18
HDAC3O15379 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.19■□□□□ 0.18
HDAC3O15379 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.19■□□□□ 0.18
HDAC3O15379 MIR5100-201ENST00000579544 119 ntBASIC16.19■□□□□ 0.18
HDAC3O15379 AC091167.2-201ENST00000579581 588 ntBASIC16.19■□□□□ 0.18
HDAC3O15379 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.19■□□□□ 0.18
HDAC3O15379 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.19■□□□□ 0.18
HDAC3O15379 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HDAC3O15379 AC131009.4-201ENST00000624048 1740 ntBASIC16.19■□□□□ 0.18
HDAC3O15379 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HDAC3O15379 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
HDAC3O15379 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HDAC3O15379 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.18■□□□□ 0.18
HDAC3O15379 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.18■□□□□ 0.18
HDAC3O15379 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
HDAC3O15379 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.18■□□□□ 0.18
HDAC3O15379 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.18■□□□□ 0.18
HDAC3O15379 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.18■□□□□ 0.18
HDAC3O15379 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.18■□□□□ 0.18
HDAC3O15379 AC104819.1-201ENST00000504587 486 ntBASIC16.18■□□□□ 0.18
HDAC3O15379 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.18■□□□□ 0.18
HDAC3O15379 AC064862.7-201ENST00000604520 867 ntBASIC16.18■□□□□ 0.18
HDAC3O15379 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.18■□□□□ 0.18
HDAC3O15379 AC116407.4-201ENST00000623319 1061 ntBASIC16.18■□□□□ 0.18
HDAC3O15379 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.18■□□□□ 0.18
HDAC3O15379 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HDAC3O15379 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 AP005117.1-201ENST00000584346 1413 ntBASIC16.18■□□□□ 0.18
HDAC3O15379 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.18■□□□□ 0.18
HDAC3O15379 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.18■□□□□ 0.18
HDAC3O15379 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC3O15379 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HDAC3O15379 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC3O15379 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HDAC3O15379 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms