Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 MIR574-201ENST00000385209 96 ntBASIC15.98■□□□□ 0.15
VMP1Q96GC9 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 AC108073.2-201ENST00000464002 357 ntBASIC15.98■□□□□ 0.15
VMP1Q96GC9 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 AC027601.4-201ENST00000611259 610 ntBASIC15.98■□□□□ 0.15
VMP1Q96GC9 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VMP1Q96GC9 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VMP1Q96GC9 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 PI4KAP1-204ENST00000612579 1703 ntBASIC15.97■□□□□ 0.15
VMP1Q96GC9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 AL591424.1-201ENST00000442569 1213 ntBASIC15.97■□□□□ 0.15
VMP1Q96GC9 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 MIR4751-201ENST00000578027 74 ntBASIC15.97■□□□□ 0.15
VMP1Q96GC9 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 TERC-201ENST00000602385 541 ntBASIC15.97■□□□□ 0.15
VMP1Q96GC9 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.97■□□□□ 0.15
VMP1Q96GC9 AC060834.1-201ENST00000443027 2032 ntBASIC15.97■□□□□ 0.15
VMP1Q96GC9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.97■□□□□ 0.15
VMP1Q96GC9 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VMP1Q96GC9 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VMP1Q96GC9 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VMP1Q96GC9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.96■□□□□ 0.15
VMP1Q96GC9 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.96■□□□□ 0.15
VMP1Q96GC9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.96■□□□□ 0.15
VMP1Q96GC9 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VMP1Q96GC9 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.96■□□□□ 0.15
VMP1Q96GC9 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VMP1Q96GC9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.96■□□□□ 0.15
VMP1Q96GC9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VMP1Q96GC9 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VMP1Q96GC9 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VMP1Q96GC9 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VMP1Q96GC9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms