Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AC012313.10-201ENST00000623509 926 ntBASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 SCARNA2-201ENST00000458748 420 ntBASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 GPAA1P2-202ENST00000606848 1787 ntBASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ATG4AQ8WYN0 PCGF3-213ENST00000620529 1899 ntBASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SAPCD2P3-201ENST00000455031 850 ntBASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms