Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.11■□□□□ 0.17
LMX1AQ8TE12 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LMX1AQ8TE12 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.1■□□□□ 0.17
LMX1AQ8TE12 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 HLA-V-204ENST00000476601 1289 ntBASIC16.1■□□□□ 0.17
LMX1AQ8TE12 SERBP1P5-201ENST00000510079 1181 ntBASIC16.1■□□□□ 0.17
LMX1AQ8TE12 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LMX1AQ8TE12 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 CETN4P-206ENST00000642099 2168 ntBASIC16.09■□□□□ 0.17
LMX1AQ8TE12 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 AC139713.2-201ENST00000641328 2723 ntBASIC16.09■□□□□ 0.17
LMX1AQ8TE12 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LMX1AQ8TE12 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms