Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC60Q8IWA6 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 FAM220BP-201ENST00000377689 816 ntBASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 HLA-H-201ENST00000383620 1096 ntBASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 TREML5P-201ENST00000421694 576 ntBASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 FO538757.1-201ENST00000623083 1397 ntBASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC60Q8IWA6 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AC055876.3-201ENST00000431496 288 ntBASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 BCRP1-201ENST00000444246 691 ntBASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AC098859.1-201ENST00000502915 1238 ntBASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AC011467.4-201ENST00000594891 528 ntBASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AC138649.4-201ENST00000612222 287 ntBASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 GGT3P-204ENST00000453783 1664 ntBASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC60Q8IWA6 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC60Q8IWA6 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms