Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC58Q4VC31 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC58Q4VC31 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC58Q4VC31 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CCDC58Q4VC31 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC58Q4VC31 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC58Q4VC31 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC58Q4VC31 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AK4P3-201ENST00000418260 669 ntBASIC14.93□□□□□ -0.02
CCDC58Q4VC31 VENTXP7-201ENST00000475503 772 ntBASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC012306.2-201ENST00000609350 630 ntBASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC083849.1-201ENST00000615227 514 ntBASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC097493.4-201ENST00000641197 219 ntBASIC14.93□□□□□ -0.02
CCDC58Q4VC31 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC58Q4VC31 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 AP002414.1-201ENST00000391405 1147 ntBASIC14.92□□□□□ -0.02
CCDC58Q4VC31 SIGLEC30P-201ENST00000455569 941 ntBASIC14.92□□□□□ -0.02
CCDC58Q4VC31 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 KRT8P49-201ENST00000604166 1432 ntBASIC14.92□□□□□ -0.02
CCDC58Q4VC31 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC58Q4VC31 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms