Protein–RNA interactions for Protein: P78426

NKX6-1, Homeobox protein Nkx-6.1, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-1P78426 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
NKX6-1P78426 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NKX6-1P78426 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
NKX6-1P78426 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
NKX6-1P78426 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
NKX6-1P78426 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.69□□□□□ -0.06
NKX6-1P78426 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 AC105339.1-204ENST00000636249 355 ntBASIC14.69□□□□□ -0.06
NKX6-1P78426 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX6-1P78426 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
NKX6-1P78426 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX6-1P78426 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
NKX6-1P78426 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX6-1P78426 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX6-1P78426 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
NKX6-1P78426 RNA5SP421-201ENST00000516864 134 ntBASIC14.68□□□□□ -0.06
NKX6-1P78426 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 AC190387.1-201ENST00000551683 408 ntBASIC14.68□□□□□ -0.06
NKX6-1P78426 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX6-1P78426 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.68□□□□□ -0.06
NKX6-1P78426 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.68□□□□□ -0.06
NKX6-1P78426 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.68□□□□□ -0.06
NKX6-1P78426 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.68□□□□□ -0.06
NKX6-1P78426 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX6-1P78426 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.68□□□□□ -0.06
NKX6-1P78426 AC092902.6-201ENST00000641783 218 ntBASIC14.68□□□□□ -0.06
NKX6-1P78426 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.68□□□□□ -0.06
NKX6-1P78426 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NKX6-1P78426 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.67□□□□□ -0.06
NKX6-1P78426 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
NKX6-1P78426 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.67□□□□□ -0.06
NKX6-1P78426 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
NKX6-1P78426 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NKX6-1P78426 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX6-1P78426 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.67□□□□□ -0.06
NKX6-1P78426 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
NKX6-1P78426 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms