Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.38■□□□□ 0.05
RNF4P78317 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.38■□□□□ 0.05
RNF4P78317 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
RNF4P78317 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.38■□□□□ 0.05
RNF4P78317 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
RNF4P78317 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.38■□□□□ 0.05
RNF4P78317 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 AC004461.1-201ENST00000412461 403 ntBASIC15.38■□□□□ 0.05
RNF4P78317 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.38■□□□□ 0.05
RNF4P78317 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
RNF4P78317 KRT18P34-201ENST00000488218 1270 ntBASIC15.38■□□□□ 0.05
RNF4P78317 AC079140.1-201ENST00000508039 487 ntBASIC15.38■□□□□ 0.05
RNF4P78317 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.38■□□□□ 0.05
RNF4P78317 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.38■□□□□ 0.05
RNF4P78317 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
RNF4P78317 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
RNF4P78317 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.38■□□□□ 0.05
RNF4P78317 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RNF4P78317 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.37■□□□□ 0.05
RNF4P78317 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.37■□□□□ 0.05
RNF4P78317 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
RNF4P78317 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.37■□□□□ 0.05
RNF4P78317 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.37■□□□□ 0.05
RNF4P78317 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.37■□□□□ 0.05
RNF4P78317 AC004835.2-201ENST00000603762 682 ntBASIC15.37■□□□□ 0.05
RNF4P78317 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.37■□□□□ 0.05
RNF4P78317 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
RNF4P78317 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.37■□□□□ 0.05
RNF4P78317 AL031731.1-201ENST00000642131 2094 ntBASIC15.37■□□□□ 0.05
RNF4P78317 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
RNF4P78317 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.37■□□□□ 0.05
RNF4P78317 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNF4P78317 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
RNF4P78317 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms