Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.16■□□□□ 0.18
HNF4AP41235 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.16■□□□□ 0.18
HNF4AP41235 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.16■□□□□ 0.18
HNF4AP41235 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.16■□□□□ 0.18
HNF4AP41235 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.16■□□□□ 0.18
HNF4AP41235 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HNF4AP41235 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.15■□□□□ 0.18
HNF4AP41235 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HNF4AP41235 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.15■□□□□ 0.18
HNF4AP41235 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 CRYGEP-201ENST00000412192 528 ntBASIC16.15■□□□□ 0.18
HNF4AP41235 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.15■□□□□ 0.18
HNF4AP41235 AC007967.2-201ENST00000432613 625 ntBASIC16.15■□□□□ 0.18
HNF4AP41235 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.15■□□□□ 0.18
HNF4AP41235 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.15■□□□□ 0.18
HNF4AP41235 OR7E47P-204ENST00000575924 449 ntBASIC16.15■□□□□ 0.18
HNF4AP41235 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 BX640515.1-201ENST00000617215 977 ntBASIC16.15■□□□□ 0.18
HNF4AP41235 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
HNF4AP41235 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HNF4AP41235 AL513477.1-201ENST00000602865 2407 ntBASIC16.15■□□□□ 0.18
HNF4AP41235 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HNF4AP41235 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 PCDH8P1-201ENST00000428983 2773 ntBASIC16.15■□□□□ 0.18
HNF4AP41235 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.15■□□□□ 0.18
HNF4AP41235 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.14■□□□□ 0.18
HNF4AP41235 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.14■□□□□ 0.17
HNF4AP41235 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.14■□□□□ 0.17
HNF4AP41235 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
HNF4AP41235 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.14■□□□□ 0.17
HNF4AP41235 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
HNF4AP41235 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HNF4AP41235 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HNF4AP41235 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.14■□□□□ 0.17
HNF4AP41235 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.14■□□□□ 0.17
HNF4AP41235 AC010654.1-201ENST00000615722 808 ntBASIC16.14■□□□□ 0.17
HNF4AP41235 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.14■□□□□ 0.17
HNF4AP41235 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms