Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NDE1Q9NXR1 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 AC006449.6-201ENST00000612330 2296 ntBASIC16.17■□□□□ 0.18
NDE1Q9NXR1 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 STARP1-201ENST00000397973 869 ntBASIC16.17■□□□□ 0.18
NDE1Q9NXR1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 KLF4P1-201ENST00000412782 1185 ntBASIC16.17■□□□□ 0.18
NDE1Q9NXR1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 AC098590.1-201ENST00000468126 897 ntBASIC16.17■□□□□ 0.18
NDE1Q9NXR1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 DUX4L17-201ENST00000557360 1267 ntBASIC16.17■□□□□ 0.18
NDE1Q9NXR1 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 AC005332.3-201ENST00000589904 676 ntBASIC16.17■□□□□ 0.18
NDE1Q9NXR1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 GGT3P-204ENST00000453783 1664 ntBASIC16.17■□□□□ 0.18
NDE1Q9NXR1 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NDE1Q9NXR1 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 AL355075.4-201ENST00000554988 638 ntBASIC16.16■□□□□ 0.18
NDE1Q9NXR1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 AL390719.2-201ENST00000606993 987 ntBASIC16.16■□□□□ 0.18
NDE1Q9NXR1 AL023973.1-201ENST00000624619 620 ntBASIC16.16■□□□□ 0.18
NDE1Q9NXR1 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NDE1Q9NXR1 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NDE1Q9NXR1 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms