Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
PCDH9Q9HC56 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
PCDH9Q9HC56 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PCDH9Q9HC56 AL139384.1-201ENST00000612143 3047 ntBASIC17.21■□□□□ 0.34
PCDH9Q9HC56 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 IGHV3-22-201ENST00000520721 359 ntBASIC17.2■□□□□ 0.34
PCDH9Q9HC56 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDH9Q9HC56 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.19■□□□□ 0.34
PCDH9Q9HC56 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDH9Q9HC56 AL596087.1-201ENST00000400979 1969 ntBASIC17.19■□□□□ 0.34
PCDH9Q9HC56 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDH9Q9HC56 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms