Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AC069335.1-201ENST00000489972 472 ntBASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 LINC01225-203ENST00000563550 1244 ntBASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AC008267.7-201ENST00000624570 1194 ntBASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AC073439.1-201ENST00000624121 1774 ntBASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.31■□□□□ 0.04
C9orf40Q8IXQ3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 AC093520.2-201ENST00000561830 333 ntBASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 AC027307.2-201ENST00000591252 911 ntBASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 AC027612.4-201ENST00000605371 583 ntBASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
C9orf40Q8IXQ3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 ALOX12P2-203ENST00000570921 1945 ntBASIC15.29■□□□□ 0.04
C9orf40Q8IXQ3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms