Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS53Q5VIR6 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.8
VPS53Q5VIR6 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS53Q5VIR6 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 MED16-214ENST00000617672 554 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 AC007064.4-201ENST00000637740 555 ntBASIC20.07■□□□□ 0.8
VPS53Q5VIR6 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS53Q5VIR6 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 HCG4-201ENST00000418983 998 ntBASIC20.06■□□□□ 0.8
VPS53Q5VIR6 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 AL031432.2-201ENST00000566714 459 ntBASIC20.06■□□□□ 0.8
VPS53Q5VIR6 AL928711.1-201ENST00000570165 459 ntBASIC20.06■□□□□ 0.8
VPS53Q5VIR6 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 AL512652.2-201ENST00000625156 1716 ntBASIC20.06■□□□□ 0.8
VPS53Q5VIR6 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS53Q5VIR6 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 AC074386.1-202ENST00000463561 864 ntBASIC20.05■□□□□ 0.8
VPS53Q5VIR6 HLA-J-202ENST00000469281 1241 ntBASIC20.05■□□□□ 0.8
VPS53Q5VIR6 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 AL645728.2-201ENST00000641974 660 ntBASIC20.05■□□□□ 0.8
VPS53Q5VIR6 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS53Q5VIR6 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AC006449.5-201ENST00000610658 2098 ntBASIC20.04■□□□□ 0.8
VPS53Q5VIR6 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 YBX2P1-201ENST00000394192 760 ntBASIC20.04■□□□□ 0.8
VPS53Q5VIR6 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms