Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNF216P1-203ENST00000404404 2427 ntBASIC16.58■□□□□ 0.25
MSH3P20585 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSH3P20585 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSH3P20585 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSH3P20585 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH3P20585 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH3P20585 HMGA1P7-201ENST00000406908 502 ntBASIC16.58■□□□□ 0.24
MSH3P20585 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.58■□□□□ 0.24
MSH3P20585 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.58■□□□□ 0.24
MSH3P20585 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.58■□□□□ 0.24
MSH3P20585 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH3P20585 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.58■□□□□ 0.24
MSH3P20585 PGAM5P1-201ENST00000518923 814 ntBASIC16.58■□□□□ 0.24
MSH3P20585 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH3P20585 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.58■□□□□ 0.24
MSH3P20585 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.58■□□□□ 0.24
MSH3P20585 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.58■□□□□ 0.24
MSH3P20585 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
MSH3P20585 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH3P20585 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.58■□□□□ 0.24
MSH3P20585 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.58■□□□□ 0.24
MSH3P20585 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.58■□□□□ 0.24
MSH3P20585 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
MSH3P20585 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
MSH3P20585 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSH3P20585 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
MSH3P20585 AL603756.1-201ENST00000606511 2163 ntBASIC16.57■□□□□ 0.24
MSH3P20585 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.57■□□□□ 0.24
MSH3P20585 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.57■□□□□ 0.24
MSH3P20585 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.57■□□□□ 0.24
MSH3P20585 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.57■□□□□ 0.24
MSH3P20585 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.57■□□□□ 0.24
MSH3P20585 AL139011.1-202ENST00000642063 584 ntBASIC16.57■□□□□ 0.24
MSH3P20585 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH3P20585 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
MSH3P20585 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH3P20585 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.56■□□□□ 0.24
MSH3P20585 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
MSH3P20585 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.56■□□□□ 0.24
MSH3P20585 AC018695.7-201ENST00000624587 2492 ntBASIC16.56■□□□□ 0.24
MSH3P20585 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 PCDHB19P-201ENST00000570871 2371 ntBASIC16.56■□□□□ 0.24
MSH3P20585 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
MSH3P20585 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms