Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.8■□□□□ 0.28
VIMP08670 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
VIMP08670 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC16.8■□□□□ 0.28
VIMP08670 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.8■□□□□ 0.28
VIMP08670 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.79■□□□□ 0.28
VIMP08670 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.79■□□□□ 0.28
VIMP08670 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.79■□□□□ 0.28
VIMP08670 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.79■□□□□ 0.28
VIMP08670 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.79■□□□□ 0.28
VIMP08670 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.79■□□□□ 0.28
VIMP08670 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.79■□□□□ 0.28
VIMP08670 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.79■□□□□ 0.28
VIMP08670 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.79■□□□□ 0.28
VIMP08670 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.79■□□□□ 0.28
VIMP08670 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 KRT8P10-201ENST00000450021 1447 ntBASIC16.79■□□□□ 0.28
VIMP08670 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VIMP08670 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 IGHGP-201ENST00000390555 1178 ntBASIC16.78■□□□□ 0.28
VIMP08670 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.78■□□□□ 0.28
VIMP08670 AP003733.1-201ENST00000491725 852 ntBASIC16.78■□□□□ 0.28
VIMP08670 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
VIMP08670 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VIMP08670 PCDHA3-202ENST00000532566 4594 ntBASIC16.78■□□□□ 0.28
VIMP08670 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.78■□□□□ 0.28
VIMP08670 PPT1-215ENST00000641471 2368 ntBASIC16.78■□□□□ 0.28
VIMP08670 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VIMP08670 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.77■□□□□ 0.28
VIMP08670 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.77■□□□□ 0.28
VIMP08670 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.77■□□□□ 0.28
VIMP08670 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VIMP08670 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VIMP08670 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms