Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 AC136632.2-201ENST00000512891 861 ntBASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 OR7E47P-204ENST00000575924 449 ntBASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 AC008667.4-201ENST00000607370 168 ntBASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.93■□□□□ 0.3
TCRBV7S3A2A0A539 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 EMBP1-201ENST00000458200 901 ntBASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 IGHV3-65-201ENST00000523210 341 ntBASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 AC087641.1-201ENST00000557561 1021 ntBASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 AC010654.1-201ENST00000615722 808 ntBASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 HYMAI-201ENST00000635591 3347 ntBASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.92■□□□□ 0.3
TCRBV7S3A2A0A539 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 LINC01711-201ENST00000598340 967 ntBASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 GGTLC5P-201ENST00000617623 998 ntBASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 AC148477.8-201ENST00000624298 468 ntBASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TCRBV7S3A2A0A539 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms