Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 AL512638.1-201ENST00000457493 794 ntBASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 AC105233.2-201ENST00000523697 349 ntBASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 AF228730.5-201ENST00000530288 346 ntBASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 AC140878.1-201ENST00000565277 250 ntBASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 AL138918.1-201ENST00000568306 659 ntBASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CTDP1Q9Y5B0 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 MIR346-201ENST00000362234 95 ntBASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 MIR4745-201ENST00000577608 62 ntBASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTDP1Q9Y5B0 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
CTDP1Q9Y5B0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 TREML5P-201ENST00000421694 576 ntBASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 AC069120.2-201ENST00000524091 540 ntBASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.2■□□□□ 0.66
CTDP1Q9Y5B0 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms