Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.29■□□□□ 0.36
AP4E1Q9UPM8 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 AC027601.4-201ENST00000611259 610 ntBASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 AC025580.3-201ENST00000617932 1424 ntBASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
AP4E1Q9UPM8 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 AL591424.1-201ENST00000442569 1213 ntBASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 RNA5SP416-201ENST00000516838 111 ntBASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 KRT19P2-202ENST00000557173 1012 ntBASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AP4E1Q9UPM8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
AP4E1Q9UPM8 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
AP4E1Q9UPM8 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.27■□□□□ 0.35
AP4E1Q9UPM8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
AP4E1Q9UPM8 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 AC092364.2-201ENST00000596710 2692 ntBASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms